PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G175300.2
Common NameB456_009G175300, LOC105768218
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 333aa    MW: 36746.1 Da    PI: 8.043
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G175300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.48.3e-062242611254
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Gorai.009G175300.2 224 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 261
                         677888999*******998.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.973212261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.29E-12222275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.23E-6222265No hitNo description
Gene3DG3DSA:4.10.280.108.9E-9226267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MDSSQIQKEW SPRSYTSPGE DSSITTFKPL NQDFSLEQQR LNSLSSSGNS RPTCQFPIGS  60
VSYGYPSTLL QTLFDPDSQP QSQQLSLFNN NRSIDYMSAT ATYGANNATE SSPSWPRPAP  120
FVRPSLPKQQ PSNLHFTNNA PLWNASATGV NDVKAGFSPS QLQPEFLLQT FEEKPNCPSL  180
TKKTNTEEVR NSGSPVKKGL SSEPPLLKRP RIETPSPLPT FKVRKEKLGD RITALQQLVS  240
PFGKTDTASV LHEAIEYIKF LHDQVNVLIT PYMKQAVPST QQQSTESLKE PEGPKQDLRS  300
LGLCLVPISS TFPVANETTV DFWTPTFGGT FR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012443486.10.0PREDICTED: transcription factor bHLH112-like isoform X1
SwissprotQ8GXT31e-60BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A0D2QI190.0A0A0D2QI19_G
TrEMBLA0A0D2S3210.0A0A0D2S321_G
STRINGVIT_00s0274g00070.t011e-156(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.11e-61bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]